{"id":209,"date":"2020-09-30T15:20:53","date_gmt":"2020-09-30T21:20:53","guid":{"rendered":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/?page_id=209"},"modified":"2022-10-14T12:07:43","modified_gmt":"2022-10-14T18:07:43","slug":"selected-publications","status":"publish","type":"page","link":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/selected-publications\/","title":{"rendered":"Selected Publications"},"content":{"rendered":"\n<div class=\"wp-block-group\"><div class=\"wp-block-group__inner-container is-layout-flow wp-block-group-is-layout-flow\">\n<p>Lail S.S., Arnold C.R., de Almeida L.G.N., McKenna N., Chiriboga J.A., Dufour A., Warren A.L., Yates R.M. (2022). Hox\u2010driven conditional immortalization of myeloid and lymphoid progenitors: Uses, advantages, and future potential. <em><strong>Traffic<\/strong><\/em> 1\u201316. doi:10.1111\/tra.12869&nbsp;<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\">[<\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/tra.12869\" target=\"_blank\">view]<\/a><\/p>\n\n\n\n<p>Greene C.J., Nguyen J.A., Cheung S.M., Arnold C.R., Balce D.R., Wang Y.T., Soderholm A., McKenna N., Aggarwal D., Campden R.I., et al. (2022). Macrophages disseminate pathogen-associated molecular patterns through the direct extracellular release of the soluble content of their phagolysosomes. <strong><em>Nature Commu<\/em><\/strong><em><strong>nications<\/strong> <\/em><strong>13<\/strong>:1\u201317.\u00a0<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\">[<\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/www.nature.com\/articles\/s41467-022-30654-4\" target=\"_blank\">view]<\/a><\/p>\n\n\n\n<p>Campden R.I., Warren A.L., Greene C.J., Chiriboga J.A., Arnold C.R., Aggarwal D., McKenna N., Sandall C.F., MacDonald J.A., Yates R.M. (2022). Extracellular cathepsin Z signals through the \u03b15 integrin and augments NLRP3 inflammasome activation. <strong><em>Journal of Biological Chemistry<\/em> 298<\/strong>:101459. <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\">[<\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0021925821012680?via%3Dihub\" target=\"_blank\">view]<\/a><\/p>\n\n\n\n<p>Ewanchuk, B.W., Arnold, C.R., Balce, D.R., Premnath P., Orsetti, T.L., Warren, A.L., Olsen A., Krawetz, R.J. and Yates, R.M. (2021). A non-immunological role for \u03b3-interferon-inducible lysosomal thiol reductase (GILT) in osteoclastic bone resorption.&nbsp;<em><strong>Science Advances.&nbsp;<\/strong><\/em><strong>7<\/strong>:1-11.&nbsp;<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\">[<\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/advances.sciencemag.org\/content\/7\/17\/eabd3684\" target=\"_blank\">view<\/a><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\">]<\/a><\/p>\n\n\n\n<p>Nguyen, J.A. and Yates, R.M. (2021). Better Together: Current Insights Into Phagosome-Lysosome Fusion.&nbsp;<em><strong>Frontiers in Immunology.&nbsp;<\/strong><\/em><strong>12<\/strong>:1-19.&nbsp;<a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fimmu.2021.636078\/full\" target=\"_blank\" rel=\"noreferrer noopener\">[view]<\/a><\/p>\n\n\n\n<p>Ewanchuk, B.W. and Yates, R.M. (2018). The phagosome and redox control of antigen processing.&nbsp;<em><strong>Free Radical Biology&nbsp;&amp; Medicine.&nbsp;<\/strong><\/em><strong>125<\/strong>:53-61.&nbsp;<a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0891584918301436\" target=\"_blank\" rel=\"noreferrer noopener\">[view]<\/a><\/p>\n<\/div><\/div>\n\n\n\n<p>Ewanchuk, B.W., Allan, E.R.O., Warren, A.L., Ramachandran, R., and Yates, R.M. (2018). The cooling compound icilin attenuates autoimmune neuroinflammation through modulation of the T-cell response.\u00a0<strong><em>The FASEB<\/em><\/strong>\u00a0<strong><em>Journal<\/em> 32<\/strong>(3):1236-1249.\u00a0<a rel=\"noreferrer noopener\" href=\"http:\/\/www.fasebj.org\/content\/early\/2017\/11\/06\/fj.201700552R.abstract\" target=\"_blank\">[view]<\/a><\/p>\n\n\n\n<p>Allan, E.R.O., Campden, R.I., Ewanchuk, B.W., Tailor, P., Balce, D.R., McKenna, N.T., Greene, C.J., Warren, A.L., Reinheckel, T., and Yates, R.M. (2017). A role for cathepsin Z in neuroinflammation provides mechanistic support for an epigenetic risk factor in multiple sclerosis.&nbsp;<em><strong>Journal of Neuroinflammation.&nbsp;<\/strong><\/em><strong>14<\/strong>(1):103.&nbsp;<a href=\"https:\/\/jneuroinflammation.biomedcentral.com\/articles\/10.1186\/s12974-017-0874-x\">[view]<\/a><\/p>\n\n\n\n<p>Cheung, S., Greene, C.J., and Yates, R.M.&nbsp;(2016). Simultaneous analysis of multiple lumenal parameters of individual phagosomes using high-content imaging.&nbsp;<strong><em>Methods in Molecular Biology<\/em><\/strong><em>:<\/em>&nbsp;Phagocytosis and Phagosomes.&nbsp;<strong>1519<\/strong>:227-239.&nbsp;<a href=\"http:\/\/link.springer.com\/protocol\/10.1007%2F978-1-4939-6581-6_15\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R. and Yates, R.M.&nbsp;(2016). Fluorometric approaches to measuring reductive and oxidative events in phagosomes.&nbsp;<strong><em>Methods in Molecular Biology<\/em><\/strong><em>:&nbsp;<\/em>Phagocytosis and Phagosomes.<strong>1519<\/strong>:215-225.&nbsp;<a href=\"http:\/\/link.springer.com\/protocol\/10.1007%2F978-1-4939-6581-6_14\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R., Rybicka, J.M., Greene, C.J., Ewanchuk, B.W., and Yates, R.M.&nbsp;(2016). Ligation of FcyR alters phagosomal processing of protein via augmentation of NADPH oxidase activity.&nbsp;<strong><em>Traffic<\/em><\/strong>.&nbsp;<strong>17<\/strong>(7):786-802.&nbsp;<a href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/tra.12396\/abstract;jsessionid=9457FAF2AAF13A3171CE10070944656F.f03t03\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R., Greene, C.J., Tailor, P., and Yates, R.M.&nbsp;(2015). Endogenous and exogenous pathways maintain the reductive capacity of the phagosome.&nbsp;<strong><em>Journal of Leukocyte Biology.<\/em><\/strong>&nbsp;<strong>100<\/strong>(1):17-26<em>.<\/em><a href=\"http:\/\/www.jleukbio.org\/content\/early\/2015\/12\/24\/jlb.2HI0315-083R.long\">[view]<\/a><\/p>\n\n\n\n<p>Chaudhuri, S., McKenna, N., Balce, D.R., and Yates, R.M.&nbsp;(2015). Infection of porcine bone marrow-derived macrophages by porcine respiratory and reproductive syndrome virus impairs phagosomal maturation.&nbsp;<strong><em>Journal of General Virology.<\/em><\/strong>&nbsp;<strong>97<\/strong>(3):669-79<em>.&nbsp;<\/em><a href=\"http:\/\/jgv.microbiologyresearch.org\/content\/journal\/jgv\/10.1099\/jgv.0.000384\">[view]<\/a><\/p>\n\n\n\n<p>Allan, E.R.O. and Yates, R.M.&nbsp;(2015). Redundancy between cysteine cathepsins in murine experimental autoimmune encephalomyelitis.&nbsp;<strong><em>PLoS One.<\/em><\/strong>&nbsp;<strong>10<\/strong>(6):e0128945.&nbsp;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0128945\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R., Allan, E.R.O., McKenna, N.T., and Yates, R.M. (2014). Gamma-Interferon-Inducible Lysosomal Thiol Reductase (GILT) Maintains Phagosomal Proteolysis in Alternatively Activated Macrophages.&nbsp;<em><strong>Journal of Biological Chemistry.<\/strong><\/em>&nbsp;<strong>289<\/strong>(46):31891-904.&nbsp;<a href=\"http:\/\/www.jbc.org\/content\/289\/46\/31891.long\">[view]<\/a><\/p>\n\n\n\n<p>Allan, E.R.O., Tailor, P., Balce, D.R., Pirzadeh, P., McKenna, N.T., Renaux, B., Warren, A.L., Jirik, F.R., and Yates, R.M.(2014). NADPH oxidase modifies patterns of MHC-II-restricted epitopic repertoires through redox control of antigen processing.&nbsp;<strong><em>Journal of Immunology.&nbsp;<\/em><\/strong><strong>192<\/strong>(11):4989-5001.&nbsp;<a href=\"http:\/\/www.jimmunol.org\/content\/early\/2014\/04\/27\/jimmunol.1302896.long\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R. and Yates, R.M.&nbsp;(2013). Redox-sensitive probes for the measurement of redox chemistries within phagosomes of macrophages and dendritic cells.<strong><em>&nbsp;Redox Biology.&nbsp;<\/em><\/strong><strong>1<\/strong>(1):467-474.&nbsp;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S2213231713000669#\">[view]<\/a><\/p>\n\n\n\n<p>Yates, R.M. (2013). Redox considerations in the phagosome: current concepts, controversies, and future challenges.&nbsp;<strong><em>Antioxidants and Redox Signaling<\/em><\/strong>.&nbsp;<strong>18<\/strong>(6):628-9.&nbsp;<a href=\"http:\/\/online.liebertpub.com\/doi\/abs\/10.1089\/ars.2012.4898\" target=\"_blank\" rel=\"noreferrer noopener\">[view]<\/a><\/p>\n\n\n\n<p>Rybicka, J.M., Balce, D.R.,&nbsp;Chaudhuri, S., Allan, E.R.O., and Yates, R.M. (2012). Phagosomal proteolysis in dendritic cells is modulated by NADPH oxidase in a pH-independent manner.&nbsp;<strong><em>The EMBO Journal.&nbsp;<\/em>31<\/strong>(4):932-44.<a href=\"http:\/\/emboj.embopress.org\/content\/31\/4\/932.long\">[view]<\/a><\/p>\n\n\n\n<p>Balce, D.R., Li, B., Allan, E.R.O., Rybicka, J.M., Krohn, R.M., and Yates, R.M. (2011). Alternative activation of macrophages by IL-4 enhances the proteolytic capacity of their phagosomes through synergistic mechanisms.&nbsp;<em><strong>Blood<\/strong><\/em>.&nbsp;<strong>118<\/strong>(15):4199-208.&nbsp;<a href=\"http:\/\/bloodjournal.hematologylibrary.org\/content\/118\/15\/4199.long\" target=\"_blank\" rel=\"noreferrer noopener\">[view]<\/a><\/p>\n\n\n\n<p>Lemmon, J.C., McFarland, R.J., Rybicka, J.M., Balce, D.R., McKeown, K.R., Krohn, R.M., Matsunaga, T.O., and Yates, R.M. (2011).&nbsp;<em>In vitro<\/em>&nbsp;and&nbsp;<em>in vivo<\/em>&nbsp;transfection of primary phagocytes via microbubble-mediated intraphagosomal sonoporation.&nbsp;<em><strong>Journal of Immunological Methods.&nbsp;<\/strong><\/em><strong>371<\/strong>(1-2):152-8.&nbsp;<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S002217591100113X\" target=\"_blank\" rel=\"noreferrer noopener\">[view]<\/a><\/p>\n\n\n\n<p>Rybicka, J.M., Balce, D.R., Khan, M., Krohn, R.M., and Yates, R.M. (2010). NADPH oxidase activity controls phagosomal proteolysis in macrophages through modulation of the lumenal redox environment of phagosomes.&nbsp;<em><strong>Proc Nat Acad Sci USA<\/strong>.&nbsp;<\/em><strong>107<\/strong>(23):10496-501.&nbsp;<a href=\"http:\/\/www.pnas.org\/content\/early\/2010\/05\/13\/0914867107.abstract\">[view]<\/a><\/p>\n\n\n\n<p>VanderVen, B.C., Hermetter, A., Huang, A., Maxfield, F.R., Russell, D.G., and Yates, R.M. (2010). Development of a novel, cell-based chemical screen to identify inhibitors of intraphagosomal lipolysis in macrophages.&nbsp;<strong><em>Cytometry A.&nbsp;<\/em>77<\/strong>(8):751-60.<\/p>\n\n\n\n<p>Yates, R.M. and Russell, D.G. (2009). Recording phagosome maturation through the real-time, spectrofluorometric measurement of hydrolytic activities.&nbsp;<em><strong>Methods in Molecular Biology<\/strong>:<\/em>&nbsp;Macrophages and Dendritic Cells.&nbsp;<strong>531<\/strong>:157-171.<\/p>\n\n\n\n<p>Yates, R.M. and Russell, D.G. (2008). Real-time spectrofluorometric assays for the lumenal environment of the maturing phagosome.&nbsp;<em><strong>Methods in Molecular Biology<\/strong>:<\/em>&nbsp;Phagosomes and Autophagosomes.&nbsp;<strong>445<\/strong>:311-325.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Lail S.S., Arnold C.R., de Almeida L.G.N., McKenna N., Chiriboga J.A., Dufour A., Warren A.L., Yates R.M. (2022). Hox\u2010driven conditional immortalization of myeloid and lymphoid progenitors: Uses, advantages, and future potential. Traffic 1\u201316. doi:10.1111\/tra.12869&nbsp;[view] Greene &hellip;<\/p>\n","protected":false},"author":215,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-209","page","type-page","status-publish","hentry"],"featured_image_src":null,"featured_image_src_square":null,"_links":{"self":[{"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/pages\/209","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/users\/215"}],"replies":[{"embeddable":true,"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/comments?post=209"}],"version-history":[{"count":8,"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/pages\/209\/revisions"}],"predecessor-version":[{"id":546,"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/pages\/209\/revisions\/546"}],"wp:attachment":[{"href":"https:\/\/wpsites.ucalgary.ca\/yates-lab\/wp-json\/wp\/v2\/media?parent=209"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}